Snacking can feel like a mini crisis when you’re striving for nutrition without sacrificing taste. That’s where my High-Protein Bagel Bites come in, transforming the mundane into something downright delightful! In just 15 minutes, you’ll whip up these gluten-free wonders, sporting a crispy outside with a creamy cheese surprise at the center. Perfect for busy mornings or meal prep, they make nutritious munching a breeze, fitting seamlessly into any lifestyle. Whether you’re fighting the fast-food traps or looking for a fun, protein-packed way to satisfy cravings, these bagel bites have you covered. Are you ready to take your snacking to the next level?

Why are High-Protein Bagel Bites a Must-Try?
Quick and Easy: These High-Protein Bagel Bites come together in just 15 minutes, making them the perfect solution for busy schedules or last-minute cravings.
Nutritious Satisfaction: With 8g of protein per bite, they’re a delicious way to power up your snacks without the guilt of traditional options.
Crispy and Creamy: The golden exterior gives way to a delightful, creamy center, making each bite a satisfying explosion of flavor that your taste buds will adore.
Versatile Enjoyment: Pair them with fresh fruit salad, Greek yogurt parfaits, or even veggie sticks for a balanced meal that’s as fun as it is nutritious. Check out my Gravy Stuffed Stuffing for even more delicious ideas.
Simple Ingredients: Made with easily accessible components like Greek yogurt and gluten-free flour, you can whip these up anytime inspiration strikes.
Elevate your snack game with this recipe that bridges the gap between health and indulgence!
High-Protein Bagel Bites Ingredients
For the Dough
• Gluten-Free Flour – Provides structure for the bagel bites; opt for a blend with xanthan gum for best results.
• Baking Powder – Acts as a leavening agent to help the bagel bites rise without yeast.
• Unflavored Protein Powder – Boosts protein content without altering flavor; you can substitute with vanilla by cutting down on sweeteners.
• Salt – Enhances flavor; I recommend using kosher or sea salt for the best taste.
• Plain Unsweetened Greek Yogurt – This is your moisture-maker and primary binder for a chewy texture; for those needing a dairy-free option, coconut yogurt works wonderfully.
For the Filling
• Cream Cheese – Adds a rich and creamy filling; block-style is preferred for easy handling, but dairy-free cream cheese is a great alternative.
Optional Ingredients
• Egg – Used for an egg wash, providing a shiny finish; skip this for a vegan version.
• Everything But The Bagel Seasoning – Sprinkles on authentic bagel flavor; feel free to use generously for an extra crunch.
With simple and wholesome ingredients, these High-Protein Bagel Bites make snacking a delightful experience!
Step‑by‑Step Instructions for High-Protein Bagel Bites
Step 1: Preheat the Air Fryer
Start by preheating your air fryer to 350°F (175°C) for about 5 minutes. This crucial step ensures that your High-Protein Bagel Bites cook evenly and develop that desirable golden-brown crisp. While the fryer heats up, gather your ingredients and equipment to streamline the process.
Step 2: Mix the Dry Ingredients
In a medium mixing bowl, combine gluten-free flour, unflavored protein powder, baking powder, and salt. Use a whisk to blend these dry ingredients thoroughly, ensuring there are no lumps. This step is vital for achieving the right texture in your bagel bites, setting the foundation for a deliciously fluffy interior.
Step 3: Create the Dough
Add plain unsweetened Greek yogurt to your dry mixture, stirring initially with a fork then using your hands as it becomes a sticky dough. Aim for a cohesive texture that holds together but isn’t too wet; if necessary, adjust with a little more flour. Once combined, let the dough rest for a minute to enhance its pliability.
Step 4: Portion the Dough
Divide the sticky dough into 10 equal pieces, shaping each portion into a ball with your hands. This uniformity guarantees that your High-Protein Bagel Bites will cook evenly. Set the dough balls aside on a parchment-lined baking sheet or a plate, ready for the next creative step.
Step 5: Form the Bagel Bites
Flatten each dough ball gently, creating a small disc. Now, scoop out about 1 teaspoon of cream cheese and place it in the center of the disc; fold the edges over to seal completely. Make sure the filling is fully enclosed to prevent any cream cheese from leaking during cooking, forming perfectly stuffed bagel bites.
Step 6: Add Toppings
For an appealing finish, brush the tops of your sealed bagel bites with an egg wash or spray lightly with oil. Then, generously sprinkle Everything But The Bagel seasoning on each bite. This topping not only adds flavor but also delivers that authentic bagel crunch, making your High-Protein Bagel Bites even more irresistible.
Step 7: Air Fry the Bagel Bites
Carefully arrange the bagel bites in a single layer in the preheated air fryer basket, ensuring there’s enough space between each one for air circulation. Air fry at 350°F (175°C) for 5-6 minutes, or until they puff up and turn golden brown. Keep an eye on them towards the end to achieve that perfect crispy exterior.
Step 8: Cool and Serve
Once done, remove the High-Protein Bagel Bites from the air fryer and allow them to cool for a few minutes on a wire rack. This cooling period makes them easier to handle and enhances their texture. Serve warm, and enjoy them as a delightful snack or a wholesome breakfast option!

What to Serve with High-Protein Bagel Bites
Elevate your mealtime with delightful sides that complement these crispy, creamy bagel bites perfectly!
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Fresh Fruit Salad: The bright, juicy flavors of seasonal fruits add a refreshing contrast to the savory bites. Plus, it’s a colorful splash on your plate!
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Greek Yogurt Parfait: Layer with granola and berries for a creamy, crunchy, and nutritious pairing. It enhances the protein punch and offers a satisfying texture mix.
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Veggie Sticks with Hummus: Crunchy carrots and celery dipped in hummus provide a nutrient-dense crunch, creating a satisfying textural harmony with the soft bagel bites.
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Protein Smoothie: A creamy blend of your favorite fruits, spinach, and protein powder creates a nutrient-packed drink that easily rounds out your snack time.
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Sweet Potato Fries: Crispy, slightly sweet fries add a delightful contrast to the richness of the bagel bites. Their warm, toasted flavor makes for a cozy snack connection.
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Chickpea Salad: Tossed with lemon and herbs, this refreshing salad complements the bagel bites while providing extra fiber and protein for an energizing boost.
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Pickles or Olives: These briny bites add a pop of flavor that invigorates your palate. Their zesty notes pair wonderfully with the creamy, cheesy center!
Make Ahead Options
These High-Protein Bagel Bites are fantastic for meal prep, saving you precious time during busy weeknights! You can prepare the dough and assemble the bagel bites up to 24 hours in advance. Simply roll them, fill with cream cheese, and seal; then, place them on a parchment-lined tray. Cover and refrigerate until you’re ready to cook. When you’re ready to enjoy, air fry them directly from the fridge for 5-6 minutes until golden brown. This approach keeps them just as delicious as when freshly made, making snacking easy and convenient without compromising on flavor!
High-Protein Bagel Bites Variations
Feel free to get creative and personalize these High-Protein Bagel Bites to suit your tastebuds and dietary needs!
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Dairy-Free: Swap Greek yogurt for coconut yogurt to make these bites completely dairy-free and still delightfully creamy.
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Herby Twist: Mix in 1-2 teaspoons of dried herbs, like oregano or thyme, into the dough for a fragrant and flavorful twist. Your kitchen will smell divine as they cook!
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Spicy Kick: Add a pinch of red pepper flakes to the dough for a gradual heat that will bring a zing to each bite. It’s a fantastic way to spice up snack time!
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Sweet Surprise: Incorporate a handful of raisins or dried cranberries into the dough for a sweet and savory flavor profile. It transforms your savory bagel bites into an exciting treat!
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Vegetable Boost: Mix in finely chopped spinach or bell peppers to add color and nutrients, making these bites not only protein-packed but also vibrantly healthy.
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Different Flours: Use a blend of almond flour and coconut flour instead of gluten-free flour for a lower-carb alternative. Adjust hydration slightly for the best consistency.
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Savory Fillings: Experiment with different fillings, such as ricotta or feta cheese, for a twist on the classic cream cheese center. Each variation brings a unique taste to the table.
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Cinnamon Sugar Topping: After air frying, brush a little melted butter on the outside and sprinkle with a cinnamon-sugar blend for a decadent dessert treat. These will be a hit with the whole family!
These variations allow you to enjoy your High-Protein Bagel Bites in countless ways! Don’t forget to pair them with a refreshing Greek yogurt parfait for a delightful snack session.
Storage Tips for High-Protein Bagel Bites
Airtight Container: Store your High-Protein Bagel Bites in an airtight container for up to 4 days at room temperature to keep them fresh and delicious.
Refrigeration: If you want to extend their shelf life, refrigerate your bagel bites for up to a week. Just reheat before serving for a delightful taste!
Freezer Storage: Freeze your bagel bites in a sealable bag or airtight container for up to 3 months. This ensures they stay flavorful and perfect for those busy snack times.
Reheating Instructions: To enjoy them again, reheat directly in the air fryer at 325°F for 4-5 minutes for that fresh-out-of-the-cook flavor and crispiness.
Expert Tips for High-Protein Bagel Bites
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Check Your Baking Powder: Fresh baking powder is essential for a good rise. Old baking powder can lead to dense bites, so do a quick freshness test if you’re unsure.
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Mind Your Yogurt: If your bagel bites turn out chewy, the Greek yogurt might be too moist. Consider straining the yogurt to achieve the right consistency before mixing.
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Flavor Boosts: Feel free to experiment by mixing in cinnamon, fresh herbs, or even a touch of garlic powder into the dough for a unique twist on your high-protein bagel bites.
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Don’t Overfill: While that creamy center is tempting, be sure not to overload the cream cheese filling. An overflowing filling can leak out during cooking, spoiling their perfect presentation.
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Proper Cooling: Allow bagel bites to cool slightly before serving. This resting period helps them firm up, enhancing the overall texture for a better snacking experience.

High-Protein Bagel Bites Recipe FAQs
What type of gluten-free flour should I use for the bagel bites?
I recommend using a gluten-free flour blend that contains xanthan gum for the best structure and texture. This combination helps the bagel bites achieve that chewy quality that makes them so delightful.
How should I store leftover High-Protein Bagel Bites?
Store your bagel bites in an airtight container at room temperature for up to 4 days. If you want them to last longer, refrigerate them for up to a week. Just make sure to reheat before serving for that fresh taste!
Can I freeze these bagel bites?
Absolutely! To freeze your High-Protein Bagel Bites, allow them to cool completely first. Then, arrange them in a single layer on a baking sheet and place them in the freezer until frozen solid. Transfer the frozen bites to a sealable bag or airtight container, where they’ll stay fresh for up to 3 months. When you’re ready to enjoy them, reheat in the air fryer at 325°F for 4-5 minutes.
What if my bagel bites come out chewy?
If your bagel bites turn out chewy, it may be due to the Greek yogurt being too moist. For a better result, try straining the yogurt before mixing it into the dough. This adjustment helps achieve a perfect balance in texture.
Are there any dietary considerations for these bagel bites?
For those with dairy allergies, you can easily substitute the Greek yogurt and cream cheese with thick coconut yogurt and dairy-free cream cheese. This allows everyone to enjoy the deliciousness of High-Protein Bagel Bites without worry!
Can I add different flavors or fillings to my bagel bites?
Very! Feel free to experiment by mixing herbs or spices into the dough or adding sweet elements like raisins or cinnamon for a twist on the typical bagel taste. The more you play with flavors, the more delightful variations you can create!

High-Protein Bagel Bites for Quick, Delicious Snacking
Ingredients
Equipment
Method
- Preheat your air fryer to 350°F (175°C) for about 5 minutes.
- In a medium bowl, mix gluten-free flour, protein powder, baking powder, and salt until well combined.
- Add Greek yogurt to the dry mixture, stirring first with a fork then with your hands until it forms a sticky dough.
- Divide the dough into 10 equal pieces and shape each into a ball.
- Flatten each ball into a disc, place cream cheese in the center, and fold edges to seal.
- Brush tops with egg wash or spray with oil and sprinkle seasoning on each bite.
- Air fry at 350°F (175°C) for 5-6 minutes or until golden brown.
- Remove from air fryer and cool on a wire rack for a few minutes before serving.

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